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Hi Catherine,
It is not unusual for directors of limited companies to have their own pension policy and for the company to make the payments into the pension fund. It does not need to go through the payroll because the pension company will have been told that it is the company making the payments and not the director making them from his own income.
In your Sage you will just show it as a bank payment each month and use a nominal code in the wages and salaries section (in my version of Sage that will be a number in the low 7000 range but I have heard some newer versions use different nominal code ranges).
Good luck.
Chris
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