Don't yer just love QuickBooks sometimes !!
First of all - receive the payment from the bank feed into the supplier account by putting the account to either 'creditors' or 'accounts payables' depending on which QBO version you have. You will need to put your Supplier name in the Name field as well. (if you're told you must put a VAT code in - put it as 0% purchases)
Now this repayment amount will be reflected in the Supplier account as well.
Next......raise an invoice for £1.........I know you 'shouldn't' have to do this, but ..............it works.
Go to 'Make Payment' for the £1 bill........you will now be able to match off your payment receipt, the credit note and the unapplied part payment all in one as they'll all be showing in top bills box and bottom credits box.
Untick the £1 bill so that it's not selected, and make sure that the amount paid box is showing as Zero.
Save the transaction, then delete the £1 bill
Its messy - but hopefully it'll sort your problem.
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